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- CS202002013_61 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_61 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_61 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_61 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_61 cell_set_aligned_alias "L4 IT" @default.
- CS202002013_61 cell_set_label "RNAseq 061" @default.
- CS202002013_61 cell_set_preferred_alias "L4/5 IT_1" @default.
- CS202002013_61 node_metadata "{"cell_set_preferred_alias": "L4/5 IT_1", "original_label": "L4/5 IT_1", "cell_set_label": "RNAseq 061", "cell_set_accession": "CS202002013_61", "cell_set_aligned_alias": "L4 IT", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#09CCC6"}" @default.
- CS202002013_61 original_label "L4/5 IT_1" @default.
- CS202002013_61 PCL_0010051 "Cell Type" @default.
- CS202002013_61 PCL_0010059 "CS202002013_61" @default.
- CS202002013_61 RO_0015003 CS202002013_188 @default.
- CS202002013_61 hasExactSynonym "L4 IT" @default.
- CS202002013_61 hasRelatedSynonym "L4 IT" @default.
- CS202002013_61 hasRelatedSynonym "L5 IT_C1" @default.
- CS202002013_61 type B0b25c2a5e5d569bd246deb68619f1420 @default.
- CS202002013_61 type B5bcf9bdb562450c5f40d2956ef0aba0b @default.
- CS202002013_61 type PCL_0010001 @default.
- CS202002013_61 type NamedIndividual @default.
- CS202002013_61 comment "In Mouse primary motor cortex (CCN202002013), L4/5 IT_1 is a member of the L4/5 IT subclass. L4/5 IT_1 includes the Patch-seq and connectivity types L4 IT. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cadps2 and Prr16 and Rorb (F-beta = 0.734), based on the NS Forest method of marker gene selection. L4/5 IT_1 cells represent 59.14% of all L4/5 IT cells collected in the snRNA-seq 10X v3 B dataset. L4/5 IT_1 cells have an average of 4365 genes detected, which is 311 less than the average for all L4/5 IT cells (4676). L4/5 IT_1 cells have an average firing rate of 30.14 Hz, compared to 26.01 Hz for all L4/5 IT cells recorded. Other distinguishing features include an input resistance of 183.23 MOhms (170.7 MOhms in all L4/5 IT cells), and upstroke:downstroke ratio of 4.2 (4.38 for all L4/5 IT cells). The most distinguishing morpholgical features of L4/5 IT_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.29 vs. 0.34 average for all L4/5 IT cells), dendrite total length (2265.8 vs. 3357.7 microns for all L4/5 IT cells), and stems (5.08 vs. 6.86 for all L4/5 IT cells)." @default.
- CS202002013_61 isDefinedBy cs202002013.owl @default.
- CS202002013_61 label "RNAseq 061 - CS202002013_61" @default.
- CS202002013_61 prefLabel "L4/5 IT_1" @default.