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- CS202002013_63 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_63 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_63 cell_set_label "RNAseq 063" @default.
- CS202002013_63 cell_set_preferred_alias "L5 IT_1" @default.
- CS202002013_63 node_metadata "{"cell_set_preferred_alias": "L5 IT_1", "original_label": "L5 IT_1", "cell_set_label": "RNAseq 063", "cell_set_accession": "CS202002013_63", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#58D2C1"}" @default.
- CS202002013_63 original_label "L5 IT_1" @default.
- CS202002013_63 PCL_0010051 "Cell Type" @default.
- CS202002013_63 PCL_0010059 "CS202002013_63" @default.
- CS202002013_63 RO_0015003 CS202002013_190 @default.
- CS202002013_63 hasRelatedSynonym "L5 IT_C2" @default.
- CS202002013_63 type B3287a4006b276544bfc80e6aba45a906 @default.
- CS202002013_63 type Bab1114c030fe129ca419e4fbc70ed0b7 @default.
- CS202002013_63 type PCL_0010001 @default.
- CS202002013_63 type NamedIndividual @default.
- CS202002013_63 comment "In Mouse primary motor cortex (CCN202002013), L5 IT_1 is a member of the L5 IT subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Deptor and Il1rapl2 (F-beta = 0.813), based on the NS Forest method of marker gene selection. L5 IT_1 cells represent 50.83% of all L5 IT cells collected in the snRNA-seq 10X v3 B dataset. L5 IT_1 cells have an average of 5452 genes detected, which is 50NAthe average for all L5 IT cells (5502). L5 IT_1 cells have an average firing rate of 26.47 Hz, compared to 27.88 Hz for all L5 IT cells recorded. Other distinguishing features include an input resistance of 153.1 MOhms (145.64 MOhms in all L5 IT cells), and upstroke:downstroke ratio of 3.98 (3.96 for all L5 IT cells). The most distinguishing morpholgical features of L5 IT_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.42 vs. 0.47 average for all L5 IT cells), dendrite total length (6309.98 vs. 6248.91 microns for all L5 IT cells), and stems (8.36 vs. 7.98 for all L5 IT cells)." @default.
- CS202002013_63 isDefinedBy cs202002013.owl @default.
- CS202002013_63 label "RNAseq 063 - CS202002013_63" @default.
- CS202002013_63 prefLabel "L5 IT_1" @default.