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- CS202002013_66 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_66 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_66 cell_set_label "RNAseq 066" @default.
- CS202002013_66 cell_set_preferred_alias "L5 IT_4" @default.
- CS202002013_66 node_metadata "{"cell_set_preferred_alias": "L5 IT_4", "original_label": "L5 IT_4", "cell_set_label": "RNAseq 066", "cell_set_accession": "CS202002013_66", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#52B4B8"}" @default.
- CS202002013_66 original_label "L5 IT_4" @default.
- CS202002013_66 PCL_0010051 "Cell Type" @default.
- CS202002013_66 PCL_0010059 "CS202002013_66" @default.
- CS202002013_66 RO_0015003 CS202002013_191 @default.
- CS202002013_66 RO_0015003 CS202002013_250 @default.
- CS202002013_66 hasRelatedSynonym "L6 IT_C2" @default.
- CS202002013_66 type B62f77fa184ab635df9fea87a3eba64f5 @default.
- CS202002013_66 type B8132cfc7e5bf4ddfbe21457762b9bf51 @default.
- CS202002013_66 type PCL_0010001 @default.
- CS202002013_66 type NamedIndividual @default.
- CS202002013_66 comment "In Mouse primary motor cortex (CCN202002013), L5 IT_4 is a member of the L5 IT subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Chrm2 and Cwh43 and Pld5 (F-beta = 0.524), based on the NS Forest method of marker gene selection. L5 IT_4 cells represent 33.94% of all L5 IT cells collected in the snRNA-seq 10X v3 B dataset. L5 IT_4 cells have an average of 5581 genes detected, which is 79 more than the average for all L5 IT cells (5502). L5 IT_4 cells have an average firing rate of 28.75 Hz, compared to 27.88 Hz for all L5 IT cells recorded. Other distinguishing features include an input resistance of 151.32 MOhms (145.64 MOhms in all L5 IT cells), and upstroke:downstroke ratio of 4.45 (3.96 for all L5 IT cells). The most distinguishing morpholgical features of L5 IT_4, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.77 vs. 0.47 average for all L5 IT cells), dendrite total length (4945.37 vs. 6248.91 microns for all L5 IT cells), and stems (5.75 vs. 7.98 for all L5 IT cells)." @default.
- CS202002013_66 isDefinedBy cs202002013.owl @default.
- CS202002013_66 label "RNAseq 066 - CS202002013_66" @default.
- CS202002013_66 prefLabel "L5 IT_4" @default.