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- CS202002013_67 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_67 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_67 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_67 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_67 cell_set_aligned_alias "L6 IT_1" @default.
- CS202002013_67 cell_set_label "RNAseq 067" @default.
- CS202002013_67 cell_set_preferred_alias "L6 IT_1" @default.
- CS202002013_67 node_metadata "{"cell_set_preferred_alias": "L6 IT_1", "original_label": "L6 IT_1", "cell_set_label": "RNAseq 067", "cell_set_accession": "CS202002013_67", "cell_set_aligned_alias": "L6 IT_1", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#B2AD23"}" @default.
- CS202002013_67 original_label "L6 IT_1" @default.
- CS202002013_67 PCL_0010051 "Cell Type" @default.
- CS202002013_67 PCL_0010059 "CS202002013_67" @default.
- CS202002013_67 RO_0015003 CS202002013_192 @default.
- CS202002013_67 hasExactSynonym "L6 IT_1" @default.
- CS202002013_67 type B40b781665111606b3485879ee75ff427 @default.
- CS202002013_67 type B7ae0f7e57d4c440bb79cc304bfeecaa0 @default.
- CS202002013_67 type PCL_0010001 @default.
- CS202002013_67 type NamedIndividual @default.
- CS202002013_67 comment "In Mouse primary motor cortex (CCN202002013), L6 IT_1 is a member of the L6 IT subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Bmpr1b and Fst and Ntng1 (F-beta = 0.614), based on the NS Forest method of marker gene selection. L6 IT_1 cells represent 30.83% of all L6 IT cells collected in the snRNA-seq 10X v3 B dataset. L6 IT_1 cells have an average of 5295 genes detected, which is 90 less than the average for all L6 IT cells (5205). L6 IT_1 cells have an average firing rate of 38.33 Hz, compared to 35.14 Hz for all L6 IT cells recorded. Other distinguishing features include an input resistance of 170.21 MOhms (185.91 MOhms in all L6 IT cells), and upstroke:downstroke ratio of 4.86 (4.38 for all L6 IT cells). The most distinguishing morpholgical features of L6 IT_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.78 vs. 0.81 average for all L6 IT cells), dendrite total length (3406.62 vs. 3273.05 microns for all L6 IT cells), and stems (5.62 vs. 6.11 for all L6 IT cells)." @default.
- CS202002013_67 isDefinedBy cs202002013.owl @default.
- CS202002013_67 label "RNAseq 067 - CS202002013_67" @default.
- CS202002013_67 prefLabel "L6 IT_1" @default.