Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_7> ?p ?o ?g. }
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- CS202002013_7 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_7 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_7 cell_set_label "RNAseq 007" @default.
- CS202002013_7 cell_set_preferred_alias "Lamp5 Slc35d3" @default.
- CS202002013_7 node_metadata "{"cell_set_preferred_alias": "Lamp5 Slc35d3", "original_label": "Lamp5 Slc35d3", "cell_set_label": "RNAseq 007", "cell_set_accession": "CS202002013_7", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FFA388"}" @default.
- CS202002013_7 original_label "Lamp5 Slc35d3" @default.
- CS202002013_7 PCL_0010051 "Cell Type" @default.
- CS202002013_7 PCL_0010059 "CS202002013_7" @default.
- CS202002013_7 RO_0015003 CS202002013_238 @default.
- CS202002013_7 hasRelatedSynonym "Lamp5-like_C3" @default.
- CS202002013_7 hasRelatedSynonym "Neurogliaform cell" @default.
- CS202002013_7 type B5c1269651f12e95b774c265be55e6644 @default.
- CS202002013_7 type Bd0b1571630a90ca229b4571975d78a03 @default.
- CS202002013_7 type PCL_0010001 @default.
- CS202002013_7 type NamedIndividual @default.
- CS202002013_7 comment "In Mouse primary motor cortex (CCN202002013), Lamp5 Slc35d3 is a member of the Lamp5 subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Alk and Sema5a (F-beta = 0.769), based on the NS Forest method of marker gene selection. Lamp5 Slc35d3 cells represent 47.57% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Slc35d3 cells have an average of 4800 genes detected, which is 172 more than the average for all Lamp5 cells (4628). Lamp5 Slc35d3 cells have an average firing rate of 46.45 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 225.98 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 3.56 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Slc35d3, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.36 vs. 0.2 average for all Lamp5 cells), axon total length (12641.79 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (2199.81 vs. 2247.19 microns for all Lamp5 cells), and stems (9.25 vs. 7.47 for all Lamp5 cells)." @default.
- CS202002013_7 isDefinedBy cs202002013.owl @default.
- CS202002013_7 label "RNAseq 007 - CS202002013_7" @default.
- CS202002013_7 prefLabel "Lamp5 Slc35d3" @default.