Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_74> ?p ?o ?g. }
Showing items 1 to 21 of
21
with 100 items per page.
- CS202002013_74 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_74 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_74 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_74 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_74 cell_set_aligned_alias "L5 IT_3" @default.
- CS202002013_74 cell_set_label "RNAseq 074" @default.
- CS202002013_74 cell_set_preferred_alias "L5/6 NP CT" @default.
- CS202002013_74 node_metadata "{"cell_set_preferred_alias": "L5/6 NP CT", "original_label": "L5/6 NP CT", "cell_set_label": "RNAseq 074", "cell_set_accession": "CS202002013_74", "cell_set_aligned_alias": "L5 IT_3", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#1AAB99"}" @default.
- CS202002013_74 original_label "L5/6 NP CT" @default.
- CS202002013_74 PCL_0010051 "Cell Type" @default.
- CS202002013_74 PCL_0010059 "CS202002013_74" @default.
- CS202002013_74 RO_0015003 CS202002013_197 @default.
- CS202002013_74 hasExactSynonym "L5 IT_3" @default.
- CS202002013_74 type B5296ca961b84ce38f80907d698694136 @default.
- CS202002013_74 type Bc13f6976bc05cc100b1b20ce1c014f29 @default.
- CS202002013_74 type PCL_0010001 @default.
- CS202002013_74 type NamedIndividual @default.
- CS202002013_74 comment "In Mouse primary motor cortex (CCN202002013), L5/6 NP CT is a member of the L6 CT subclass. L5/6 NP CT includes the Patch-seq and connectivity types L5 IT_3. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Grp and Rxfp1 and Tshz2 (F-beta = 0.378), based on the NS Forest method of marker gene selection. L5/6 NP CT cells represent 0.82% of all L6 CT cells collected in the snRNA-seq 10X v3 B dataset. L5/6 NP CT cells have an average of 4336 genes detected, which is 521 less than the average for all L6 CT cells (4857). L5/6 NP CT cells have an average firing rate of 53.33 Hz, compared to 27.46 Hz for all L6 CT cells recorded. Other distinguishing features include an input resistance of 222.15 MOhms (204.84 MOhms in all L6 CT cells), and upstroke:downstroke ratio of 4.1 (3.41 for all L6 CT cells). The most distinguishing morpholgical features of L5/6 NP CT, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.49 vs. 0.8 average for all L6 CT cells), dendrite total length (3382.9 vs. 2884.47 microns for all L6 CT cells), and stems (5 vs. 6.97 for all L6 CT cells)." @default.
- CS202002013_74 isDefinedBy cs202002013.owl @default.
- CS202002013_74 label "RNAseq 074 - CS202002013_74" @default.
- CS202002013_74 prefLabel "L5/6 NP CT" @default.