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- CS202002013_76 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_76 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_76 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_76 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_76 cell_set_aligned_alias "L6 CT_2" @default.
- CS202002013_76 cell_set_label "RNAseq 076" @default.
- CS202002013_76 cell_set_preferred_alias "L6 CT Cpa6" @default.
- CS202002013_76 node_metadata "{"cell_set_preferred_alias": "L6 CT Cpa6", "original_label": "L6 CT Cpa6", "cell_set_label": "RNAseq 076", "cell_set_accession": "CS202002013_76", "cell_set_aligned_alias": "L6 CT_2", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "PMID:34616066|PMID:34616062", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#338C5E"}" @default.
- CS202002013_76 original_label "L6 CT Cpa6" @default.
- CS202002013_76 PCL_0010051 "Cell Type" @default.
- CS202002013_76 PCL_0010059 "CS202002013_76" @default.
- CS202002013_76 RO_0015003 CS202002013_200 @default.
- CS202002013_76 hasExactSynonym "L6 CT_2" @default.
- CS202002013_76 hasRelatedSynonym "L6 CT_2" @default.
- CS202002013_76 type Bb3a93b3b82b117899ff6d5ef591b76da @default.
- CS202002013_76 type Bd2ba22b37e9eeade2ee3cc9d1620db48 @default.
- CS202002013_76 type PCL_0010001 @default.
- CS202002013_76 type NamedIndividual @default.
- CS202002013_76 comment "In Mouse primary motor cortex (CCN202002013), L6 CT Cpa6 is a member of the L6 CT subclass. L6 CT Cpa6 includes the Patch-seq and connectivity types L6 CT_2. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Foxp2 and Hs3st4 and Zfpm2 (F-beta = 0.823), based on the NS Forest method of marker gene selection. L6 CT Cpa6 cells represent 85.46% of all L6 CT cells collected in the snRNA-seq 10X v3 B dataset. L6 CT Cpa6 cells have an average of 4849 genes detected, which is 8 less than the average for all L6 CT cells (4857). L6 CT Cpa6 cells have an average firing rate of 24.74 Hz, compared to 27.46 Hz for all L6 CT cells recorded. Other distinguishing features include an input resistance of 215.08 MOhms (204.84 MOhms in all L6 CT cells), and upstroke:downstroke ratio of 3.39 (3.41 for all L6 CT cells). The most distinguishing morpholgical features of L6 CT Cpa6, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.81 vs. 0.8 average for all L6 CT cells), dendrite total length (2727.54 vs. 2884.47 microns for all L6 CT cells), and stems (7.13 vs. 6.97 for all L6 CT cells)." @default.
- CS202002013_76 isDefinedBy cs202002013.owl @default.
- CS202002013_76 label "RNAseq 076 - CS202002013_76" @default.
- CS202002013_76 prefLabel "L6 CT Cpa6" @default.