Matches in Ubergraph for { <http://purl.obolibrary.org/obo/pcl/CS202002013_8> ?p ?o ?g. }
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- CS202002013_8 cell_set_additional_aliases "L5/6 neurogliaform cell" @default.
- CS202002013_8 cell_set_additional_aliases "Lamp5_3" @default.
- CS202002013_8 cell_set_alias_assignee "Federico Scala" @default.
- CS202002013_8 cell_set_alias_assignee "Nikolas Jorstad" @default.
- CS202002013_8 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_8 cell_set_alias_citation "PMID:33184512" @default.
- CS202002013_8 cell_set_alias_citation "PMID:34616062" @default.
- CS202002013_8 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_8 cell_set_aligned_alias "Lamp5 Lhx6" @default.
- CS202002013_8 cell_set_label "RNAseq 008" @default.
- CS202002013_8 cell_set_preferred_alias "Lamp5 Lhx6" @default.
- CS202002013_8 node_metadata "{"cell_set_preferred_alias": "Lamp5 Lhx6", "original_label": "Lamp5 Lhx6", "cell_set_label": "RNAseq 008", "cell_set_accession": "CS202002013_8", "cell_set_aligned_alias": "Lamp5 Lhx6", "cell_set_additional_aliases": "Lamp5_3|L5/6 neurogliaform cell", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066||PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#C77963"}" @default.
- CS202002013_8 original_label "Lamp5 Lhx6" @default.
- CS202002013_8 PCL_0010051 "Cell Type" @default.
- CS202002013_8 PCL_0010059 "CS202002013_8" @default.
- CS202002013_8 RO_0015003 CS202002013_129 @default.
- CS202002013_8 hasExactSynonym "L5/6 neurogliaform cell" @default.
- CS202002013_8 hasExactSynonym "Lamp5 Lhx6" @default.
- CS202002013_8 hasExactSynonym "Lamp5_3" @default.
- CS202002013_8 hasRelatedSynonym "L5/6 neurogliaform cell" @default.
- CS202002013_8 hasRelatedSynonym "Lamp5_3" @default.
- CS202002013_8 type B5ffebe19dd2cbbf56241a6f33b9f4255 @default.
- CS202002013_8 type B65b61fc2c595424ab7650a7eb96a750d @default.
- CS202002013_8 type PCL_0010001 @default.
- CS202002013_8 type NamedIndividual @default.
- CS202002013_8 comment "In Mouse primary motor cortex (CCN202002013), Lamp5 Lhx6 is a member of the Lamp5 subclass. Lamp5 Lhx6 includes the Patch-seq and connectivity types Lamp5_3|L5/6 neurogliaform cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Gm45680 and Nos1 (F-beta = 0.694), based on the NS Forest method of marker gene selection. Lamp5 Lhx6 cells represent 4.4% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Lhx6 cells have an average of 4881 genes detected, which is 253 more than the average for all Lamp5 cells (4628). Lamp5 Lhx6 cells have an average firing rate of 45.83 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 268.88 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.46 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Lhx6, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.81 vs. 0.2 average for all Lamp5 cells), axon total length (20623.17 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (1352.27 vs. 2247.19 microns for all Lamp5 cells), and stems (6 vs. 7.47 for all Lamp5 cells)." @default.
- CS202002013_8 isDefinedBy cs202002013.owl @default.
- CS202002013_8 label "RNAseq 008 - CS202002013_8" @default.
- CS202002013_8 prefLabel "Lamp5 Lhx6" @default.