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- CS202002013_81 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_81 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_81 cell_set_label "RNAseq 081" @default.
- CS202002013_81 cell_set_preferred_alias "L6b Col6a1" @default.
- CS202002013_81 node_metadata "{"cell_set_preferred_alias": "L6b Col6a1", "original_label": "L6b Col6a1", "cell_set_label": "RNAseq 081", "cell_set_accession": "CS202002013_81", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#69419D"}" @default.
- CS202002013_81 original_label "L6b Col6a1" @default.
- CS202002013_81 PCL_0010051 "Cell Type" @default.
- CS202002013_81 PCL_0010059 "CS202002013_81" @default.
- CS202002013_81 RO_0015003 CS202002013_204 @default.
- CS202002013_81 RO_0015003 CS202002013_252 @default.
- CS202002013_81 hasRelatedSynonym "L6 CT_C1" @default.
- CS202002013_81 type B7d00caea2409d4f38cb747198fae7fff @default.
- CS202002013_81 type B9dde3d54fb6b1111a3dd600c92fa8a80 @default.
- CS202002013_81 type PCL_0010001 @default.
- CS202002013_81 type NamedIndividual @default.
- CS202002013_81 comment "In Mouse primary motor cortex (CCN202002013), L6b Col6a1 is a member of the L6b subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Bmpr1b and Ctgf and Hs3st2 (F-beta = 0.497), based on the NS Forest method of marker gene selection. L6b Col6a1 cells represent 21.02% of all L6b cells collected in the snRNA-seq 10X v3 B dataset. L6b Col6a1 cells have an average of 5471 genes detected, which is 11 more than the average for all L6b cells (5482). L6b Col6a1 cells have an average firing rate of 26.67 Hz, compared to 28.79 Hz for all L6b cells recorded. Other distinguishing features include an input resistance of 290.88 MOhms (299.53 MOhms in all L6b cells), and upstroke:downstroke ratio of 4.22 (4.57 for all L6b cells). The most distinguishing morpholgical features of L6b Col6a1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.88 vs. 0.89 average for all L6b cells), dendrite total length (3157.94 vs. 2881.17 microns for all L6b cells), and stems (8.5 vs. 5.67 for all L6b cells)." @default.
- CS202002013_81 isDefinedBy cs202002013.owl @default.
- CS202002013_81 label "RNAseq 081 - CS202002013_81" @default.
- CS202002013_81 prefLabel "L6b Col6a1" @default.