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- CS202002013_86 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_86 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_86 cell_set_label "RNAseq 086" @default.
- CS202002013_86 cell_set_preferred_alias "L5/6 NP_1" @default.
- CS202002013_86 node_metadata "{"cell_set_preferred_alias": "L5/6 NP_1", "original_label": "L5/6 NP_1", "cell_set_label": "RNAseq 086", "cell_set_accession": "CS202002013_86", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#48CB80"}" @default.
- CS202002013_86 original_label "L5/6 NP_1" @default.
- CS202002013_86 PCL_0010051 "Cell Type" @default.
- CS202002013_86 PCL_0010059 "CS202002013_86" @default.
- CS202002013_86 RO_0015003 CS202002013_208 @default.
- CS202002013_86 type B1c5d556b163b8f870c9c69469cff7c88 @default.
- CS202002013_86 type Bf909162fbf3a71c76457570172fa538c @default.
- CS202002013_86 type PCL_0010001 @default.
- CS202002013_86 type NamedIndividual @default.
- CS202002013_86 comment "In Mouse primary motor cortex (CCN202002013), L5/6 NP_1 is a member of the L5/6 NP subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cyp7b1 and Dkk2 and Vwc2l (F-beta = 0.612), based on the NS Forest method of marker gene selection. L5/6 NP_1 cells represent 20.14% of all L5/6 NP cells collected in the snRNA-seq 10X v3 B dataset. L5/6 NP_1 cells have an average of 4471 genes detected, which is 133 less than the average for all L5/6 NP cells (4338). L5/6 NP_1 cells have an average firing rate of 51.67 Hz, compared to 50.83 Hz for all L5/6 NP cells recorded. Other distinguishing features include an input resistance of 359.58 MOhms (339.81 MOhms in all L5/6 NP cells), and upstroke:downstroke ratio of 3.44 (3.42 for all L5/6 NP cells). The most distinguishing morpholgical features of L5/6 NP_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.46 vs. 0.55 average for all L5/6 NP cells), dendrite total length (2912.99 vs. 2768.42 microns for all L5/6 NP cells), and stems (4 vs. 4.5 for all L5/6 NP cells)." @default.
- CS202002013_86 isDefinedBy cs202002013.owl @default.
- CS202002013_86 label "RNAseq 086 - CS202002013_86" @default.
- CS202002013_86 prefLabel "L5/6 NP_1" @default.