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- CS202002013_9 cell_set_alias_assignee "Zizhen Yao" @default.
- CS202002013_9 cell_set_alias_citation "PMID:34616066" @default.
- CS202002013_9 cell_set_label "RNAseq 009" @default.
- CS202002013_9 cell_set_preferred_alias "Sncg Col14a1" @default.
- CS202002013_9 node_metadata "{"cell_set_preferred_alias": "Sncg Col14a1", "original_label": "Sncg Col14a1", "cell_set_label": "RNAseq 009", "cell_set_accession": "CS202002013_9", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#7E0ACB"}" @default.
- CS202002013_9 original_label "Sncg Col14a1" @default.
- CS202002013_9 PCL_0010051 "Cell Type" @default.
- CS202002013_9 PCL_0010059 "CS202002013_9" @default.
- CS202002013_9 RO_0015003 CS202002013_134 @default.
- CS202002013_9 hasRelatedSynonym "Large CCK basket cell" @default.
- CS202002013_9 hasRelatedSynonym "Sncg-like_C2" @default.
- CS202002013_9 type B062b22e236fd0f14543268656a7c288b @default.
- CS202002013_9 type Bc54cfa3e38bc06995f956e4ab66a3920 @default.
- CS202002013_9 type PCL_0010001 @default.
- CS202002013_9 type NamedIndividual @default.
- CS202002013_9 comment "In Mouse primary motor cortex (CCN202002013), Sncg Col14a1 is a member of the Sncg subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cdh6 and Col25a1 and Eps8 (F-beta = 0.536), based on the NS Forest method of marker gene selection. Sncg Col14a1 cells represent 22.48% of all Sncg cells collected in the snRNA-seq 10X v3 B dataset. Sncg Col14a1 cells have an average of 5405 genes detected, which is 342 more than the average for all Sncg cells (5063). Sncg Col14a1 cells have an average firing rate of 31.67 Hz, compared to 30.38 Hz for all Sncg cells recorded. Other distinguishing features include an input resistance of 337.34 MOhms (368.39 MOhms in all Sncg cells), and upstroke:downstroke ratio of 2.72 (2.41 for all Sncg cells). The most distinguishing morpholgical features of Sncg Col14a1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.29 vs. 0.3 average for all Sncg cells), axon total length (9899.2 vs. 7744.27 microns for all Sncg cells), dendrite total length (2819.84 vs. 2212.98 microns for all Sncg cells), and stems (6.5 vs. 5.83 for all Sncg cells)." @default.
- CS202002013_9 isDefinedBy cs202002013.owl @default.
- CS202002013_9 label "RNAseq 009 - CS202002013_9" @default.
- CS202002013_9 prefLabel "Sncg Col14a1" @default.